Objectives
The primary objectives of this library synthesis project were to:
1. Synthesize Diverse Small Molecules: Expand the chemical library by creating a wide range of small molecules.
2. Integrate Inventory Systems: Ensure the seamless availability of reactants and reagents through robust inventory integration.
3. Transfer Data to LIMS: Facilitate the smooth transfer of synthesized data to the Laboratory Information Management System (LIMS) for further analysis and record-keeping.
Our Approach
To achieve these objectives, the following strategies were implemented:
1. Compiler-Based Real Chemistry for Smarter Synthesis:
- Utilized advanced algorithms to design and optimize chemical reactions.
- Defined detailed reaction roles, tags, and condition templates to enhance the specificity and relevance of synthesis operations.
2. Intelligent Condition Optimization:
- Developed a robust solution to optimize reaction conditions, including the required amounts and concentrations of reactants and reagents.
- Implemented condition templates that could be reused and adjusted for different synthesis processes, ensuring high yields and purity.
3. Centralized Registration and Inventory Integration:
- Integrated with Mosaic and other inventory systems to manage the inventory of reactants, solvents, and agents.
- Automated inventory checks to ensure the availability of necessary components before initiating synthesis.
- Leveraged automated worklist generation to create detailed instructions for liquid handling devices, optimizing pipetting techniques and scheduling tasks seamlessly.
4. Streamlined Workflows for Online and Offline Execution:
- Supported both automated (online) and manual (offline) execution modes for library synthesis.
- Provided tools for real-time monitoring of tasks, capturing progress, and reporting errors to ensure efficient task management.
5. Post-Synthesis Workflows for Quality Assurance:
- Defined workflows for subsequent processing, including purity checks and MS affinity tests.
- Configured worklists for post-synthesis activities to ensure smooth transitions between different stages of the synthesis process.
The Outcome
The implementation of these strategies led to significant achievements:
1. Scalable & High-Quality Synthesis and Registration:
- Successfully synthesized and registered over 18,000 compounds, significantly expanding the chemical library.
- Achieved high yields and purity of synthesized molecules through optimized conditions.
2. Improved Operational Efficiency:
- Reduced manual tasks and minimized the potential for human error through automated worklist generation and real-time monitoring.
- Enhanced the productivity of researchers by allowing them to focus on critical scientific endeavors rather than manual data entry and process management.
- Streamlined workflows enabled faster and more efficient synthesis processes, reducing turnaround times for compound creation.
3. Seamless Inventory Management:
- Integration with inventory systems ensured the availability of all necessary components, reducing delays due to shortages.
- Automated inventory checks and updates improved the accuracy and efficiency of inventory management, ensuring that reactants and reagents were always available when needed.
4. Efficient Data Transfer to LIMS:
- Data from the synthesis process was efficiently transferred to the LIMS, ensuring that all synthesized compounds were accurately recorded and available for further analysis.
- Enhanced data accuracy and consistency through automated data capture and transfer processes, reducing the risk of errors in data entry and improving the reliability of records.
5. Customizability and Scalability:
- The synthesis process was tailored to meet specific research requirements, demonstrating the flexibility of Project JedAI’s solutions.
- Processes were scaled to accommodate varying project sizes, from small-scale experiments to large-scale library synthesis projects, showcasing the scalability of the implemented strategies.
Conclusion
This case study demonstrates how our customized framework transformed library synthesis workflows through its powerful combination of automation, AI-driven optimization, and seamless data integration.
By leveraging compiler-based real chemistry, intelligent condition optimization, and integrated inventory management, the system achieved faster and more precise compound synthesis while significantly improving data accuracy and operational efficiency.
The customized software solution successfully synthesized a vast array of compounds while streamlining the entire process, providing scalable capabilities adaptable to varying project sizes.
These advancements not only substantially expanded the chemical library but also delivered valuable insights and tools that continue to enhance ongoing research and development efforts, creating immediate productivity gains while supporting long-term scientific discovery.
Partner with Integrant
As an integral component of the broader framework we developed, the library synthesis module exemplifies our commitment to delivering customizable and fully integrated software solutions that meet the unique needs of our biotech customers.
Partner with Integrant and turn your vision into reality. Let’s discuss how we can tailor innovative solutions to your specific needs and shape the future of your lab together. Contact us to learn more.